v3.5.80 — Tier A Blocker Fixes

Highlights

Fixes three Tier A blockers that made the CLI, MCP agent_spawn tool, and Claude Code memory integration partially unusable.

🐛 Fixed

• #1596 — CLI lazy-loaded command routing (daemon start, bare start, doctor)
  • Two-pass parser was greedy-matching the first positional as a phantom subcommand when the outer command was lazy-loaded
  • Added lazyCommandNames registry to Parser so Pass 1 breaks at the first non-flag positional for known-lazy commands
• #1567 — MCP agent_spawn input validation rejected every input
  • validateAgentSpawn was passing {agentType, name} to @claude-flow/security's SpawnAgentSchema which expects {type, id}; every call failed with type: Required
  • Also relaxed the strict 15-value enum so custom agent types (memory-specialist, etc.) are accepted
• #1556 — AutoMemoryBridge.curateIndex() destroyed hand-curated MEMORY.md
  • On every Stop-hook tick when no topic files matched the hardcoded DEFAULT_TOPIC_MAPPING, the curator overwrote MEMORY.md with a stub
  • Now exits early with an index:skipped event when section map is empty

🔧 Also

• @claude-flow/memory's prebuild now cleans tsconfig.tsbuildinfo so tsc --incremental produces fresh output after rm -rf dist

📦 Published packages

Package	Version
@claude-flow/cli	3.5.80
@claude-flow/memory	3.0.0-alpha.14
claude-flow	3.5.80
ruflo	3.5.80

✅ Regression tests

• parser.test.ts — 52/52 (includes 4 new lazy command routing (#1596) cases)
• validate-input-agent-spawn.test.ts — 4/4
• auto-memory-bridge.test.ts — 74/74 (includes new #1556 preservation test)

🚀 Upgrade

npx @claude-flow/cli@latest --version   # 3.5.80
npx ruflo@latest --version              # 3.5.80

Full Changelog: v3.5.78...v3.5.80

Ruflo v3.5.78 — ESM Stability, Security Hardening & Intelligence Backends

Ruflo v3.5.78

The most stable Ruflo release yet. This release eliminates an entire class of ESM module crashes, hardens security across 6 packages, introduces native intelligence backends, and resolves 10 user-reported critical issues.

34 commits, 145 files changed, ~8,000 lines of improvements since v3.5.59.

Install / Upgrade

npx ruflo@3.5.78 --version        # one-shot
npx @claude-flow/cli@3.5.78 doctor # health check

All three packages updated on npm (alpha, latest, v3alpha):

• @claude-flow/cli@3.5.78
• claude-flow@3.5.78
• ruflo@3.5.78

---

Critical Bug Fixes

ESM Module Crash Elimination

The entire codebase has been audited and purged of bare require() calls that crash in ESM mode ("type": "module"). 29 total require() calls fixed across two rounds:

Round	PR / Commit	Files Fixed	Calls Fixed
1	#1564 (v3.5.77)	autopilot-state.ts, autopilot.ts, claims.ts	12
2	v3.5.78	diff-classifier.ts, coverage-router.ts, performance-tools.ts, mcp-server.ts, checker.ts, security.ts	17

Before: ruflo autopilot status, ruflo claims list, diff analysis, coverage routing, performance profiling, security scanning, and update checking all crashed with ReferenceError: require is not defined.

After: Every runtime code path uses proper ESM import statements or the createRequire pattern for native modules.

Closes #1559, #1560, #1561, #1563.

cleanup --force No Longer Destroys User Config (#1557)

Previously, cleanup --force deleted the entire .claude/ directory — wiping agents, skills, commands, settings, memory databases, and worktrees that belong to Claude Code, not Ruflo.

Now: Only Ruflo-owned paths are cleaned (.claude/helpers/), and settings.json is surgically edited to remove only hooks and claudeFlow keys while preserving all user configuration.

CLI One-Shot Commands No Longer Hang (#1552, #1550)

memory store, memory retrieve, config list, and other one-shot commands hung indefinitely due to open handles (MCP listeners, timers, SQLite connections) keeping the event loop alive. Fixed with process.exit(0) after cli.run() resolves.

Daemon Zombie Prevention (#1551)

daemon stop now scans running processes via ps and kills stale daemon instances — not just the PID stored in the PID file. daemon start also cleans up zombies before launching and shows a clear error if a daemon is already running.

Memory Bridge Respects CLAUDE_FLOW_CWD (#1562)

MCP memory tools under Claude Desktop were reading/writing to the wrong directory because auto-memory-bridge.ts hardcoded process.cwd(). Now respects the CLAUDE_FLOW_CWD environment variable.

---

Security Hardening (PR #1558)

Comprehensive security and performance fixes across 6 packages:

• SQL injection prevention — All sql.js queries converted to parameterized db.prepare / bind statements
• Command injection prevention — Replaced execSync with execFileSync (no shell interpretation) throughout
• Prototype pollution prevention — JSON reviver strips __proto__, constructor, prototype keys
• HNSW hash collision safety — Added dual-hash (djb2 + sdbm) and 1,000-probe cap with explicit error on exhaustion
• BoundedSet FIFO eviction — Uses Map insertion order for correct FIFO behavior
• Resilient bulk operations — Promise.allSettled for operations that shouldn't fail atomically
• PID validation — Number.isInteger guard before process operations

---

New Features

Native RuVLLM + Graph-Node Intelligence Backends (ADR-086, ADR-087)

New native intelligence backends for the RuVector system:

• RuVLLM backend — Direct integration with local LLM inference
• Graph-Node backend — Graph-based intelligence routing for complex reasoning chains

DiskANN Vector Search Backend (ADR-077)

Research-grade vector search with:

• 8,000x faster insert than HNSW for large datasets
• Perfect recall on benchmark suites
• SSD-optimized for datasets that exceed RAM

Claude Code ↔ AgentDB Memory Bridge (ADR-076)

Phase 2 MCP tools for bridging Claude Code's auto-memory with AgentDB:

• memory_import_claude — Import Claude Code memories with 384-dim ONNX embeddings
• memory_bridge_status — Bridge health monitoring
• memory_search_unified — Semantic search across all namespaces

Self-Learning Pipeline (ADR-075)

End-to-end wiring of the self-learning pipeline:

• Pattern recording from successful task completions
• Neural training on discovered patterns
• Cross-session knowledge transfer

saveCheckpoint Resilience (v3.5.75)

Checkpoint save now verifies file existence and falls through to JS fallback on native module failures.

---

Quality & Honesty

• README honesty audit — Removed fabricated metrics and inflated claims; all stats now reference real benchmarks
• Stub elimination — 9 remaining stub implementations replaced with real scanning, metrics, and health checks
• Comprehensive #1425 remediation — Real quantization, honest performance stubs, input validation at system boundaries
• Statusline accuracy — Replaced all fake heuristics with real data sources from hook activity and AgentDB stats

---

Issues Closed (10)

Issue	Title
#1559	Bare require() in ESM modules — autopilot/claims crash
#1560	ESM/CJS regression (dup of #1559)
#1561	Autopilot require is not defined (dup of #1559)
#1563	Autopilot/claims fail on fresh install (dup of #1559)
#1557	cleanup --force deletes entire .claude/ directory
#1552	CLI one-shot commands hang indefinitely
#1551	Daemon processes accumulate as zombies
#1550	Memory subcommands hang (same root cause as #1552)
#1562	Memory commands ignore CLAUDE_FLOW_CWD
#1558	Security & performance fixes across 6 packages

---

Stats

34 commits
145 files changed
7,966 insertions(+), 2,333 deletions(-)
29 bare require() calls eliminated
6 packages security-hardened
10 issues resolved
3 npm packages published (alpha, latest, v3alpha)

---

Full Changelog: v3.5.59...v3.5.78

v3.5.59 — Full Capability Verification: 291 Tests, 314 MCP Tools, 38 CLI Commands

Introduction

Ruflo v3.5.59 delivers a comprehensive capability verification across the entire platform — 314 MCP tools, 38 CLI commands with 140+ subcommands, 22 plugins, 16 QE plugin tools, and 60+ agent types. Every tool has been tested against real data, real APIs, and real file systems, with 291 automated tests providing continuous proof.

This release upgrades 19 MCP tools to production-grade implementations backed by AgentDB persistence, native CLI integration (git, gh), and OS-level metrics. The agentic-qe plugin (16 tools, 51 agents) is updated and verified against the live ruflo repository.

---

Platform Inventory

314 MCP Tools by Category

Category	File	Tools	Description
Hooks & Intelligence	hooks-tools.ts	62	Lifecycle hooks, intelligence trajectories, workers, sessions, coverage routing
Browser Automation	browser-tools.ts	23	Web interaction — click, fill, screenshot, snapshot, evaluate, navigate
Guidance & Discovery	guidance-tools.ts	21	Capability discovery, workflow recommendations, quickref
AgentDB	agentdb-tools.ts	15	ReasoningBank, hierarchical memory, semantic routing, causal edges, batch ops
System Health	system-tools.ts	15	Health checks, metrics, status monitoring, system info, reset
Claims & Authorization	claims-tools.ts	12	ADR-016 issue claims, handoffs, stealing, rebalancing, board view
Transfer & Registry	transfer-tools.ts	11	IPFS plugin registry, store search, PII detection, pattern transfer
Autopilot	autopilot-tools.ts	10	Persistent completion management, learning, prediction, progress
ruvLLM / WASM	ruvllm-tools.ts	10	HNSW routing, SONA adaptation, MicroLoRA, chat formatting
Swarm Orchestration	swarm-tools.ts	10	Swarm init, status, health, shutdown
Workflow	workflow-tools.ts	10	Workflow create, execute, run, pause, resume, cancel, templates
WASM Agents	wasm-agent-tools.ts	10	Sandboxed agents with virtual filesystem, gallery, tool exec
Hive-Mind Consensus	hive-mind-tools.ts	9	Queen-led Byzantine consensus, broadcast, memory, spawn
DAA	daa-tools.ts	8	Decentralized autonomous agents, cognitive patterns, knowledge sharing
Agent Lifecycle	agent-tools.ts	7	Spawn, list, status, terminate, update, pool, health
Coordination	coordination-tools.ts	7	Consensus, topology, load balancing, sync, node management, metrics
Embeddings	embeddings-tools.ts	7	Vector embeddings, Poincaré ball, ONNX neural, search, compare
Memory	memory-tools.ts	7	Store, retrieve, search, list, delete, stats, migrate
Task Management	task-tools.ts	7	Create, assign, status, complete, cancel, list, summary
Code Analysis	analyze-tools.ts	6	Diff analysis, risk assessment, reviewer suggestions, classification
Configuration	config-tools.ts	6	Get, set, list, import, export, reset
Neural Learning	neural-tools.ts	6	Train, status, patterns, predict, optimize, compress
Performance	performance-tools.ts	6	Benchmark, profile, metrics, optimize, bottleneck, report
Security / AIDefence	security-tools.ts	6	Scan, analyze, PII detection, learning, safety checks, stats
Terminal	terminal-tools.ts	6	Create, execute, close, list, history
GitHub Integration	github-tools.ts	5	Repo analyze, PR manage, issue track, workflow, metrics
Session	session-tools.ts	5	Save, restore, list, delete, info
Progress Tracking	progress-tools.ts	4	Check, summary, sync, watch
Coverage Routing	coverage-tools.ts	3	Coverage-aware routing, gap detection, suggestions
TOTAL	29 files	314

38 CLI Commands (140+ Subcommands)

Command	Subs	Description
agent	10	spawn, list, status, stop, metrics, pool, health, logs, auto-scale, follow
swarm	8	init, start, stop, status, scale, monitor, coordinate, observe
memory	14	store, retrieve, search, list, delete, init, export, import, stats, cleanup, configure, migrate, compress, rebuild-index
task	8	create, list, status, assign, cancel, retry, logs, reset-state
session	9	save, restore, list, delete, export, import, activate, current, active
mcp	11	start, stop, status, restart, exec, config, logs, list, enable, disable, toggle
hooks	41	27 hooks + 12 workers + intelligence sub-system (trajectory, patterns)
init	8	wizard, check, upgrade, full, minimal, skills, hooks, settings
status	6	status, health-check, agents, memory, tasks, watch
start	6	start, stop, restart, daemon, force, skip-mcp
neural	11	train, status, patterns, predict, optimize, export, import, benchmark, compile, verify, evaluate
security	8	scan, audit, cve, threats, validate, report, defend, check
performance	7	benchmark, profile, metrics, optimize, bottleneck, analyze, report
embeddings	17	embed, batch, search, init, compare, configure, models, check, cache, normalize, test, generate, export, import, status, consolidate, benchmark
hive-mind	13	init, join, leave, spawn, broadcast, memory, consensus, status, shutdown, optimize-memory, save-state, watch, metrics
guidance	8	compile, apply, optimize, ab-test, status, retrieve, gates, command
autopilot	12	enable, disable, status, config, learn, predict, history, reset, check, log, watch, clear
config	9	init, get, set, add, remove, export, import, reset, providers
daemon	7	start, stop, status, trigger, enable, disable, logs
doctor	2	doctor with --fix
completions	6	bash, zsh, fish, powershell
migrate	7	status, run, verify, rollback, check, dry-run, fix
workflow	8	create, run, list, status, validate, watch, stop, show
analyze	13	diff, code, ast, dependencies, complexity, boundaries, circular, imports, modules, outdated, symbols, partitions, security
route	10	route, list-agents, explore, suggest, feedback, export, import, stats, reset, q-learning
progress	6	check, summary, sync, watch, detailed, interval
issues	12	claim, handoff, list, steal, stealable, release, status, load, mine, board, apply, rebalance
update	7	check, all, history, rollback, clear-cache, dry-run, force
plugins	11	list, install, uninstall, enable, disable, upgrade, search, info, dev, create, featured
providers	7	list, add, remove, configure, test, usage, models
deployment	9	deploy, rollback, status, environments, history, logs, release, verify, validate
claims	8	check, grant, revoke, list, policies, roles, scope, action
transfer-store	7	search, featured, trending, info, download, publish, verify
cleanup	2	cleanup with dry-run, force, keep-config
process	6	monitor, logs, signals, workers, status, follow
appliance	8	build, run, extract, inspect, verify, profile, sign, publish
agent-wasm	5	wasm-status, wasm-create, wasm-prompt, wasm-gallery, tool-execute
ruvector	8	init, setup, import, migrate, status, benchmark, optimize, backup

22 Plugins (IPFS Registry)

Distributed via IPFS (QmXbfEAaR7D2Ujm4GAkbwcGZQMHqAMpwDoje4583uNP834). Install with npx ruflo plugins install <name>.

Core Plugins (6)

Plugin	Version	Description
@claude-flow/neural	3.0.0-alpha.7	Neural pattern training — WASM SIMD, MoE routing, Flash Attention
@claude-flow/security	3.0.0-alpha.1	Security scanning, CVE detection, compliance auditing, threat modeling
@claude-flow/embeddings	3.0.0-alpha.1	Vector embeddings — sql.js, document chunking, hyperbolic (Poincaré ball)
@claude-flow/claims	3.0.0-alpha.8	Claims-based authorization for fine-grained access control
@claude-flow/performance	3.0.0-alpha.1	Performance profiling, benchmarking, optimization recommendations
@claude-flow/plugins	3.0.0-alpha.1	Plugin SDK — create, test, and publish ruflo plugins

Integration Plugins (10)

Plugin	Version	Description
@claude-flow/plugin-agentic-qe	3.5.59	16 MCP tools, 51 agents across 12 DDD bounded contexts
@claude-flow/plugin-prime-radiant	0.1.5	Sheaf cohomology, spectral graph theory, consensus verification
@claude-flow/plugin-gastown-bridge	3.0.0-alpha.1	Gas Town orchestrator — WASM formula parsing, Beads sync, 352x faster
@claude-flow/teammate-plugin	1.0.0-alpha.1	TeammateTool integration — 21 MCP tools, BMSSP topology routing
@claude-flow/plugin-code-intelligence	0.1.0	Semantic code analysis, architectural pattern detection, refactoring
@claude-flow/plugin-test-intelligence	0.1.0	Test generation, coverage analysis, mutation testing, flaky detection
@claude-flow/plugin-perf-optimizer	0.1.0	AI bottleneck detection, memory profiling, automated tuning
@claude-flow/plugin-neural-coordination	0.1.0	Multi-agent neural coordination, emergent behavior modeling
@claude-flow/plugin-cognitive-kernel	0.1.0	Working memory, attention mechanisms, meta-cognitive monitoring
@claude-flow/plugin-quantum-optimizer	0.1.0	Quantum-inspired optimization — QAOA simulation, variational circuits

Research Plugins (3)

Plugin	Version	Description
@claude-flow/plugin-hyperbolic-reasoning	0.1.0	Poincaré embeddings, geodesic attention for hierarchical reasoning
@claude-flow/plugin-healthcare-clinical	0.1.0	HIPAA-compliant cli...

v3.5.51 — terminal_execute, agent results, security scan, auto-discovery

Fixes

#1457: terminal_execute Now Executes Commands

• Was a stub returning [STATE TRACKING] Command recorded: ... — now uses execSync for real execution
• Respects timeout parameter, captures stdout/stderr, returns real exit codes

#1448: Agent & Task Results Retrievable

• agent_status now returns lastResult field with output from the agent's last completed task
• task_status now returns result field (was stored but never included in response)

#1493: Security Scan Works on Windows

• Removed 2>/dev/null || true POSIX shell syntax from npm audit calls
• Uses stdio: 'pipe' + try/catch for cross-platform compatibility

#1497: MCP Tools Auto-Discovery via Global CLAUDE.md

• init --full now writes ruflo tool instructions to ~/.claude/CLAUDE.md
• Claude will auto-discover and use ruflo MCP tools without per-project manual wiring
• Idempotent — won't duplicate the block on re-init

Stats

• 1725 tests pass (28 files, 0 failures)
• Published: @claude-flow/cli@3.5.51, claude-flow@3.5.51, ruflo@3.5.51

v3.5.50 — 4 Critical Bug Fixes

Fixes

#1499: ReasoningBank Controller Disabled

• Missing embedder param when instantiating ReasoningBank in ControllerRegistry
• Added createEmbeddingService() call, matching the pattern used by HierarchicalMemory and MemoryConsolidation

#1490: SQLite Database Path Relative to CWD

• All path.join(process.cwd(), '.swarm') changed to path.resolve()
• Prevents data loss when MCP server's working directory changes between restarts

#1489: memory_search Defaults to 'default' Namespace

• When namespace is not explicitly provided, search now queries ALL namespaces
• Previously defaulted to 'default', silently returning empty results for entries in named namespaces

#1484: init --full Hooks Never Fire

• writeSettings skipped writing hooks if .claude/settings.json already existed
• Now merges hooks, env vars, and permissions into existing settings instead of skipping
• ruflo init --full is now a single command that produces a working setup

Stats

• 1725 tests pass (28 files, 0 failures)
• Published: @claude-flow/cli@3.5.50, claude-flow@3.5.50, ruflo@3.5.50

v3.5.49 — P0 Daemon & AgentDB Controller Fixes

P0 Fixes

#1478: Daemon Dies Immediately After Spawn

• Removed premature PID file write that caused self-detection race condition
• Added ref'd setInterval keepalive (unref'd timers don't keep Node.js alive)
• Changed detached spawn stdio from numeric FDs to 'ignore' (fixes Windows child death)

#1492: ESM require('path') Disables All 15 AgentDB Controllers

• require('path') throws ReferenceError in ESM context, silently killing initAgentDB()
• Replaced with await import('node:path') — works in both ESM and CJS

#1492 (Bug 2): bridgeSearchPatterns Wrong Method

• ReasoningBank exposes .search() not .searchPatterns() in some versions
• Added fallback: tries .searchPatterns() first, falls back to .search()

Stats

• 1725 tests pass (28 files, 0 failures)
• Published: @claude-flow/cli@3.5.49, claude-flow@3.5.49, ruflo@3.5.49

v3.5.48 — Security, P1 Fixes, WASM CLI

What's New

Security Hardening (v3.5.45)

• Prototype pollution prevention via safeJsonParse() — strips __proto__, constructor, prototype
• NaN/Infinity bypass protection in validateNumber()
• Task source allowlist (VALID_TASK_SOURCES) prevents injection
• Atomic file writes (tmp + rename) for state persistence
• Shared autopilot-state.ts module eliminates 140 lines of duplication

Token Drain Prevention (v3.5.46) — #1427, #1330

• Daemon autoStart defaults to false (opt-in only)
• Session hook startDaemon defaults to false
• Background workers reduced 10 → 3, schedules relaxed (audit 4h, optimize 2h)

P1 Bug Fixes (v3.5.47)

• #1122: HNSW ghost entries — bridge delete path now invalidates HNSW index
• #1117: Orphan processes — worker timeout raised 5min → 16min
• #1111: Headless stdin pipe hang — already fixed (closed)
• #1109: classifyHandoffIfNeeded — Claude Code platform issue (closed)

RuVector WASM CLI Exposure (v3.5.48)

• ADR-067: RuVector WASM utilization audit and improvement plan
• 4 new CLI commands: agent wasm-status, agent wasm-create, agent wasm-prompt, agent wasm-gallery
• Fixed 16 pre-existing ruvllm-wasm test failures (mock constructors)

Test Results

• 28/28 test files pass
• 1725/1725 tests pass, 0 failures

Install

npx @claude-flow/cli@latest
npx claude-flow@latest
npx ruflo@latest

v3.5.43 — Critical Issue Remediation & Stub Removal

v3.5.43 — Critical Issue Remediation & Stub Removal

Summary

Resolves 9 GitHub issues, replaces 22 fake-success stubs with honest errors, and fixes all healthcare plugin test failures. See ADR-067 for full details.

Issues Resolved

Issue	Title	Fix
#1390	memory_store crash on ONNX worker threads	process.exit(0) after init to avoid ONNX hang
#1391	MCP tool prefix inconsistency	Standardized claude-flow prefix in hive-mind prompts
#1392	Worker tracking incomplete	PID singleton + SIGKILL fallback in daemon
#1393	Headless worker stdin pipe error	Pipe stdin, bypass nested session detection
#1394	Swarm commands stub-only	Real MCP calls + .swarm/state.json persistence
#1395	Model alias resolution fails	Map short names → dated model IDs
#1396	Global -f flag collision	Removed from parser; subcommands use --format
#1397	ruvllm-tools JSON Schema invalid	Added items to 4 array schemas
#1398	Vector dimension mismatch (1536 vs 384)	Updated config-adapter.ts default

Fake-Success Stubs Replaced (22 total)

All stubs now return { success: false, exitCode: 1 } with guidance:

• config.ts (5): init, set, reset, export, import
• deployment.ts (6): deploy, rollback, status, environments, release, logs
• migrate.ts (4): status, run, verify, rollback
• claims.ts (5): list, grant, revoke, roles, policies
• providers.ts (2): configure, test

Healthcare Plugin Fixes

• Fixed MCPToolResult type to match MCP SDK format ({isError, content})
• Fixed RBAC role case-sensitivity (lowercase → uppercase normalization)
• Fixed OntologyNavigationInputSchema missing default for direction
• Injected bridge mocks in tests (bypasses ESM vi.mock issues)
• Result: 23 test failures → 0

Test Results

• 1709 tests passing (net +6 from v3.5.42)
• 23 healthcare failures fixed
• Pre-existing failures unchanged (controller-registry: 1, ruvllm-wasm suite isolation: 16)

npm Packages

All three packages published with latest, alpha, and v3alpha dist-tags:

npm i @claude-flow/cli@3.5.43
npm i claude-flow@3.5.43
npm i ruflo@3.5.43

PR

• #1435 (fix/critical-issues-adr-060)

---

🤖 Generated with claude-flow

Co-Authored-By: claude-flow ruv@ruv.net

RuFlo v3.5.31 — Intelligence Accuracy, RuVector WASM & Community Fixes

RuFlo v3.5.31

16 releases since v3.5.15 — This release brings real semantic embeddings via RuVector WASM, a complete statusline accuracy overhaul, intelligence vector store fixes, and merges from 5 community PRs.

Packages: @claude-flow/cli@3.5.31 · claude-flow@3.5.31 · ruflo@3.5.31

---

Highlights

RuVector WASM Integration — Real semantic embeddings are now available to all users out of the box via WebAssembly, replacing placeholder/random vectors. HNSW-indexed search delivers 150x–12,500x speedup with no native compilation required.

Intelligence Vector Store Fix — The intelligence.cjs hook was failing silently because auto-memory-store.json is a flat JSON array, but loadEntries() expected {entries: [...]}. Both the bundled helper and the init generator now handle both formats correctly.

Statusline Accuracy Overhaul — Six hardcoded/estimated values in the statusline replaced with real data: actual hook counts from settings.json, real AgentDB entry counts, deep test file scanning, stale swarm detection, audit freshness checks, and actual ADR file counts.

---

Features

• feat: RuVector WASM integration + real semantic embeddings (#1374) — Cross-platform WASM-based embeddings for all users, no native deps
• feat: v3.5.23 — merge 5 community PRs + ADR-065 — Batch merge of community contributions
• feat: implement all stub features + fix 8 bugs (v3.5.22) — Full implementation of previously stubbed features

Bug Fixes

• fix: intelligence vector store + statusline accuracy (#1377) — Flat array format support + 6 statusline accuracy fixes in both bundled helpers and init generator
• fix: add missing attention class wrappers + CJS/ESM interop (#1370, from #1338) — Attention class wrappers for neural module, ESM/CJS default export handling
• fix: close semantic routing learning loop in hooks-tools (#1311) — Learning loop now properly feeds back into routing decisions
• fix(daemon): CPU-proportional maxCpuLoad replaces hardcoded 2.0 (#1369, rebased from #1353) — Daemon CPU limit now scales with available cores
• fix: ESM/CJS interop with 'default' in module check (#1368) — Robust module format detection
• fix(agents): make base template frontmatter YAML-safe (#1317) — Prevents YAML parse errors in agent templates
• fix: PluginManager priority and version checks (#1336) — Correct plugin load ordering
• fix: benchmark environment lookup in ESM (#1337) — Benchmark suite works in ESM contexts
• fix: hooks package type export paths (#1341) — Correct export map for hooks package
• fix(memory): add prepublishOnly guard for dist exports (#1314) — Prevents publishing without build
• fix(cli): prevent TS2307 for optional @claude-flow/codex import (#1346) — Clean compilation when codex package not installed
• fix: 7 critical audit fixes, Windows settings, ADR-063 (v3.5.21) — Windows path handling, settings validation
• fix: doctor checks + AgentDB bridge errors (v3.5.19) — Doctor command reliability improvements
• fix: statusline generator always overwrites legacy copy (#1360) — Init now generates accurate statusline
• fix: update swarm-activity.json on agent spawn/stop (#1354) — Community PR from @dancinglightning
• fix: statusline branding RuFlo V3.5, Opus 4.6 (#1351) — Correct model and product branding
• fix: use $CLAUDE_PROJECT_DIR for hooks path resolution (v3.5.15) — Portable hook paths

Documentation

• docs: Update branding from Claude Flow to Ruflo in init executor (#1305)
• docs: update MCP tool counts to 259, add beginner guidance (#1366)

Community Contributions

Thanks to @dancinglightning for the swarm activity tracking fix (#1354) and to all contributors across PRs #1336, #1337, #1341, #1314, #1317.

---

Upgrade

npx claude-flow@latest init
# or
npx ruflo@latest init

Full Changelog

v3.5.15...v3.5.31

v3.5.15 — Fix hooks path resolution with $CLAUDE_PROJECT_DIR

Fix: Hooks Path Resolution (v3.5.15)

Problem

Claude Code hooks using relative paths (.claude/helpers/...) or $(git rev-parse --show-toplevel) break when Claude Code changes the working directory to a subdirectory during agent operations.

Solution

All hook commands now use $CLAUDE_PROJECT_DIR — the official Claude Code environment variable that always resolves to the project root, regardless of current working directory.

Changes

• .claude/settings.json — 15 hook paths updated from $(git rev-parse --show-toplevel) to $CLAUDE_PROJECT_DIR
• v3/@claude-flow/cli/.claude/settings.json — 9 hook paths updated from bare relative paths
• settings-generator.ts — hookHandlerCmd(), autoMemoryCmd(), and generateStatusLineConfig() now emit $CLAUDE_PROJECT_DIR-based paths
• New projects created via npx claude-flow@latest init will automatically get correct paths

Published Packages

Package	Version	Install
@claude-flow/cli	3.5.15	npx @claude-flow/cli@latest
claude-flow	3.5.15	npx claude-flow@latest
ruflo	3.5.15	npx ruflo@latest

References

• Upstream issue: anthropics/claude-code#9039
• Claude Code hooks docs: https://code.claude.com/docs/en/hooks